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babelomics_expression_data [2017/05/24 10:36] (current)
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 +====== Babelomics' formats: Expression Data Matrix ======
 +
 +[[Babelomics]] stores expression measurements (intensity measurements in the case of microarray data) in a matrix format. Each of those matrices contains the measurements of several arrays in an experiment. Each array is sorted in a column and each gene is ordered in a row.
 +
 +All arrays in the experiment are assumed to be of the same type and therefore to have the **same gene identifiers**. This gene identifiers are stored in the first column of the data matrix, naming its rows.
 +
 +This matrix structures are saved in plain **text** files. The columns are separated by **tabs** and the rows are separated by a **newline** or carriage return. An **end of line** is also needed at the very **end of the file**. Reading and rewriting this data should be straight forward by using any **spreadsheet**.
 +
 +Almost any line in the file starting with the symbol **#** is considered a //comment line// and is not used for computations. **Exceptions** are lines starting with a [[Babelomics_tags|Babelomics reserved words]] which also contain the **#** symbol.
 +
 +**Empty lines** are not allowed in the data files. Please make sure to take them out or to comment them using **#** before submitting your data or you may get unexpected errors.
 +
 +An example of expression data file with the above mentioned structure would look like this:
 +
 +      gene1 10.23 9.98 10.41 10.55 10.65 9.69
 +      gene2 10.51 9.74 10.65 10.63 10.43 10.35
 +      gene3 9.89 10.02 9.89 11.03 10.21 10.77
 +      gene4 10.25 10.83 8.94 10.16 10.49 10.46
 +      gene... ... ... ... ... ... ...
 +
 +
  
babelomics_expression_data.txt · Last modified: 2017/05/24 10:36 (external edit)
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