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eds_hypoxia [2010/09/28 17:57] dmontaner |
eds_hypoxia [2017/05/24 10:36] (current) |
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| + | ====== Human Embryonic Stem Cells Under Hypoxia Conditions ====== | ||
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| + | A time course study. **16** [[Agilent]] one-color arrays. | ||
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| + | __Files:__ | ||
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| + | * {{:example_data:hypoxia:hypoxia.zip|Raw data}}: **16** [[Agilent]] arrays. [[raw data|Raw data]] files + **sample information** are provided in a **zip** file. (143 MB) | ||
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| + | * {{:example_data:hypoxia:hypoxia_sampleinfo.txt|Sample information}}: Classification information of each sample (array). In a **tab** delimited **text** file. | ||
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| + | * {{:example_data:hypoxia:development_agilent_quantiles.txt|Normalized data}}: using **agilent** background correction and **quantiles** between array normalization. **Tab** delimited **text** file. (8.000 genes) | ||
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| + | ------ | ||
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| + | The **design** of the data is as follows: | ||
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| + | ^ filename ^ samplename ^ time ^ oxlevel ^ replicate ^ timeindays ^ class ^ | ||
| + | |12h_21_1_251485017921_1_2.txt|12h_21_1|12h|21|1|0.5|normal| | ||
| + | |12h_21_2_251485017924_1_1.txt|12h_21_2|12h|21|2|0.5|normal| | ||
| + | |12h_5_1_251485017921_1_3.txt|12h_5_1|12h|5|1|0.5|hypoxia| | ||
| + | |12h_5_2_251485017924_1_2.txt|12h_5_2|12h|5|2|0.5|hypoxia| | ||
| + | |15d_21_1_251485017958_1_3.txt|15d_21_1|15d|21|1|15|normal| | ||
| + | |15d_21_2_251485017958_1_4.txt|15d_21_2|15d|21|2|15|normal| | ||
| + | |15d_5_1_251485017923_1_4.txt|15d_5_1|15d|5|1|15|hypoxia| | ||
| + | |15d_5_2_251485017957_1_3.txt|15d_5_2|15d|5|2|15|hypoxia| | ||
| + | |24h_21_1_251485017922_1_1.txt|24h_21_1|24h|21|1|1|normal| | ||
| + | |24h_21_2_251485017924_1_4.txt|24h_21_2|24h|21|2|1|normal| | ||
| + | |24h_5_1_251485017922_1_2.txt|24h_5_1|24h|5|1|1|hypoxia| | ||
| + | |24h_5_2_251485017956_1_1.txt|24h_5_2|24h|5|2|1|hypoxia| | ||
| + | |5d_21_1_251485017922_1_3.txt|5d_21_1|5d|21|1|5|normal| | ||
| + | |5d_21_2_251485017958_1_2.txt|5d_21_2|5d|21|2|5|normal| | ||
| + | |5d_5_1_251485017922_1_4.txt|5d_5_1|5d|5|1|5|hypoxia| | ||
| + | |5d_5_2_251485017956_1_3.txt|5d_5_2|5d|5|2|5|hypoxia| | ||
