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eds_hypoxia [2010/09/28 17:57]
dmontaner
eds_hypoxia [2017/05/24 10:36] (current)
Line 1: Line 1:
 +====== Human Embryonic Stem Cells Under Hypoxia Conditions ======
 +
 +A time course study. **16** [[Agilent]] one-color arrays. 
 +
 +__Files:__
 +
 +  * {{:example_data:hypoxia:hypoxia.zip|Raw data}}: **16** [[Agilent]] arrays. [[raw data|Raw data]] files + **sample information** are provided in a **zip** file. (143 MB)
 +
 +  * {{:example_data:hypoxia:hypoxia_sampleinfo.txt|Sample information}}: Classification information of each sample (array). In a **tab** delimited **text** file.
 +
 +  * {{:example_data:hypoxia:development_agilent_quantiles.txt|Normalized data}}:  using **agilent** background correction and **quantiles** between array normalization.  **Tab** delimited **text** file. (8.000 genes)
 +
 +
 +------
 +
 +The **design** of the data is as follows:
 +
 +^  filename  ^  samplename  ^  time  ^  oxlevel  ^  replicate  ^  timeindays  ^  class  ^
 +|12h_21_1_251485017921_1_2.txt|12h_21_1|12h|21|1|0.5|normal|
 +|12h_21_2_251485017924_1_1.txt|12h_21_2|12h|21|2|0.5|normal|
 +|12h_5_1_251485017921_1_3.txt|12h_5_1|12h|5|1|0.5|hypoxia|
 +|12h_5_2_251485017924_1_2.txt|12h_5_2|12h|5|2|0.5|hypoxia|
 +|15d_21_1_251485017958_1_3.txt|15d_21_1|15d|21|1|15|normal|
 +|15d_21_2_251485017958_1_4.txt|15d_21_2|15d|21|2|15|normal|
 +|15d_5_1_251485017923_1_4.txt|15d_5_1|15d|5|1|15|hypoxia|
 +|15d_5_2_251485017957_1_3.txt|15d_5_2|15d|5|2|15|hypoxia|
 +|24h_21_1_251485017922_1_1.txt|24h_21_1|24h|21|1|1|normal|
 +|24h_21_2_251485017924_1_4.txt|24h_21_2|24h|21|2|1|normal|
 +|24h_5_1_251485017922_1_2.txt|24h_5_1|24h|5|1|1|hypoxia|
 +|24h_5_2_251485017956_1_1.txt|24h_5_2|24h|5|2|1|hypoxia|
 +|5d_21_1_251485017922_1_3.txt|5d_21_1|5d|21|1|5|normal|
 +|5d_21_2_251485017958_1_2.txt|5d_21_2|5d|21|2|5|normal|
 +|5d_5_1_251485017922_1_4.txt|5d_5_1|5d|5|1|5|hypoxia|
 +|5d_5_2_251485017956_1_3.txt|5d_5_2|5d|5|2|5|hypoxia|
  
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