====== 2.2 Coverage Analysis - Neuropathies-related genes coverage ======

===== Coverage by gene =====

  * **CMT (Charcot-Marie-Tooth disease) genes detailed mean coverage by sample** {{:espinos:images_ana:genes_cmt_results_bier_ssv5.txt|BIER}} {{:espinos:images_ana:genes_cmt_results_cnag.txt|CNAG}}

{{:espinos:images_ana:boxplot_mean_cov_by_gene_cmt_bier_ssv5.png?400|CMT genes BIER}} {{:espinos:images_ana:boxplot_mean_cov_by_gene_cmt_cnag.png?400|CMT genes CNAG}}

  * **HSN-HSMN (Hereditary Sensory (and Motor) Neuropathies) genes detailed mean coverage by sample** {{:espinos:images_ana:genes_hsn_hsmn_results_bier_ssv5.txt|BIER}} {{:espinos:images_ana:genes_hsn_hsmn_results_cnag.txt|CNAG}} 

{{:espinos:images_ana:boxplot_mean_cov_by_gene_hsn_hsmn_bier_ssv5.png?400|HSN-HSMN genes BIER}}{{:espinos:images_ana:boxplot_mean_cov_by_gene_hsn_hsmn_cnag.png?400|HSN-HSMN genes CNAG}} 

  * **HMN (Hereditary Motor Neuropathies) genes detailed mean coverage by sample** {{:espinos:images_ana:genes_hmn_results_bier_ssv5.txt|BIER}} {{:espinos:images_ana:genes_hmn_results_cnag.txt|CNAG}}

{{:espinos:images_ana:boxplot_mean_cov_by_gene_hmn_bier_ssv5.png?400|HMN genes BIER}} {{:espinos:images_ana:boxplot_mean_cov_by_gene_hmn_cnag.png?400|HMN genes CNAG}}

  * **SMA (Spinal Muscular Atrophy) genes detailed mean coverage by sample** {{:espinos:images_ana:genes_sma_results_bier_ssv5.txt|BIER}} {{:espinos:images_ana:genes_sma_results_cnag.txt|CNAG}}

{{:espinos:images_ana:boxplot_mean_cov_by_gene_sma_bier_ssv5.png?400|SMA genes BIER}} {{:espinos:images_ana:boxplot_mean_cov_by_gene_sma_cnag.png?400|SMA genes CNAG}}

  * **SP (Spastic Paraplegia) genes detailed mean coverage by sample** {{:espinos:images_ana:genes_sp_results_bier_ssv5.txt|BIER}} {{:espinos:images_ana:genes_sp_results_cnag.txt|CNAG}}

{{:espinos:images_ana:boxplot_mean_cov_by_gene_sp_bier_ssv5.png?400|SP genes BIER}} {{:espinos:images_ana:boxplot_mean_cov_by_gene_sp_cnag.png?400|SP genes CNAG}}

  * **ALS (Amyotrophic Lateral Sclerosis) genes detailed mean coverage by sample** {{:espinos:images_ana:genes_als_results_bier_ssv5.txt|BIER}} {{:espinos:images_ana:genes_als_results_cnag.txt|CNAG}}

{{:espinos:images_ana:boxplot_mean_cov_by_gene_als_bier_ssv5.png?400|ALS genes BIER}} {{:espinos:images_ana:boxplot_mean_cov_by_gene_als_cnag.png?400|ALS genes CNAG}}

  * **Ataxia genes detailed mean coverage by sample** {{:espinos:images_ana:genes_ataxia_results_bier_ssv5.txt|BIER}} {{:espinos:images_ana:genes_ataxia_results_cnag.txt|CNAG}}

{{:espinos:images_ana:boxplot_mean_cov_by_gene_ataxia_bier_ssv5.png?400|Ataxia genes BIER}}{{:espinos:images_ana:boxplot_mean_cov_by_gene_ataxia_cnag.png?400|Ataxia genes CNAG}}

===== Coverage by region =====

  * **CMT (Charcot-Marie-Tooth disease) genes intervals summary by sample** {{:espinos:images_ana:intervals_genes_cmt_bier_ssv5.txt|BIER}} {{:espinos:images_ana:intervals_genes_cmt_cnag.txt|CNAG}}

{{:espinos:images_ana:plot_intervals_cov_genes_cmt_bier_mean_all_samples_ssv5.png?400|CMT genes BIER}}{{:espinos:images_ana:plot_intervals_cov_genes_cmt_cnag_mean_all_samples.png?400|CMT genes CNAG}}

  * **HSN-HSMN (Hereditary Sensory (and Motor) Neuropathies) genes intervals summary by sample** {{:espinos:images_ana:intervals_genes_hsn_hsmn_bier_ssv5.txt|BIER}} {{:espinos:images_ana:intervals_genes_hsn_hsmn_cnag.txt|CNAG}}

{{:espinos:images_ana:plot_intervals_cov_genes_hsn_hsmn_bier_mean_all_samples_ssv5.png?400|HSN-HSMN genes BIER}} {{:espinos:images_ana:plot_intervals_cov_genes_hsn_hsmn_cnag_mean_all_samples.png?400|HSN-HSMN genes CNAG}}

  * **HMN (Hereditary Motor Neuropathies) genes intervals summary by sample** {{:espinos:images_ana:intervals_genes_hmn_bier_ssv5.txt|BIER}} {{:espinos:images_ana:intervals_genes_hmn_cnag.txt|CNAG}}

{{:espinos:images_ana:plot_intervals_cov_genes_hmn_bier_mean_all_samples_ssv5.png?400|HMN genes BIER}} {{:espinos:images_ana:plot_intervals_cov_genes_hmn_cnag_mean_all_samples.png?400|HMN genes CNAG}}

  * **SMA (Spinal Muscular Atrophy) genes intervals summary by sample** {{:espinos:images_ana:intervals_genes_sma_bier_ssv5.txt|BIER}} {{:espinos:images_ana:intervals_genes_sma_cnag.txt|CNAG}}

{{:espinos:images_ana:plot_intervals_cov_genes_sma_bier_mean_all_samples_ssv5.png?400|SMA genes BIER}} {{:espinos:images_ana:plot_intervals_cov_genes_sma_cnag_mean_all_samples.png?400|SMA genes CNAG}}

  * **SP (Spastic Paraplegia) genes intervals summary by sample** {{:espinos:images_ana:intervals_genes_sp_bier_ssv5.txt|BIER}} {{:espinos:images_ana:intervals_genes_sp_cnag.txt|CNAG}}

{{:espinos:images_ana:plot_intervals_cov_genes_sp_bier_mean_all_samples_ssv5.png?400|SP genes BIER}} {{:espinos:images_ana:plot_intervals_cov_genes_sp_cnag_mean_all_samples.png?400|SP genes CNAG}}

  * **ALS (Amyotrophic Lateral Sclerosis) genes intervals summary by sample** {{:espinos:images_ana:intervals_genes_als_bier_ssv5.txt|BIER}} {{:espinos:images_ana:intervals_genes_als_cnag.txt|CNAG}}

{{:espinos:images_ana:plot_intervals_cov_genes_als_bier_mean_all_samples_ssv5.png?400|ALS genes BIER}} {{:espinos:images_ana:plot_intervals_cov_genes_als_cnag_mean_all_samples.png?400|ALS genes CNAG}}

  * **Ataxia genes intervals summary by sample** {{:espinos:images_ana:intervals_genes_ataxia_bier_ssv5.txt|BIER}} {{:espinos:images_ana:intervals_genes_ataxia_cnag.txt|CNAG}}

{{:espinos:images_ana:plot_intervals_cov_genes_ataxia_bier_mean_all_samples_ssv5.png?400|Ataxia genes BIER}}
{{:espinos:images_ana:plot_intervals_cov_genes_ataxia_cnag_mean_all_samples.png?400|Ataxia genes CNAG}}