2.2 Coverage Analysis - All exome coverage

Here, we show an overview of all exome coverage obtained after processing reads in each pipeline. Main statistical indicators included in each table:

Total_Cov_bases: total sum of all base pairs coverage of each interval (exome capture kit target)
Mean_Cov, Median_Cov: mean and median coverage of all intervals
%_bases_>15, >30, >40, >50: percentage of intervals base pairs covered by more than 15, 30, 40 or 50 reads

Sample	Total_Cov_bases	Mean_Cov	Median_Cov	%_bases_>15	%_bases_>30	%_bases_>40	%_bases_>50
SGT038	1839178575	36.52	35	88.2	58.2	39.2	24.0
SGT077	1617599251	32.12	30	84.2	49.6	30.3	16.6
SGT161	1634278064	32.45	31	84.5	50.6	31.1	17.1
SGT187	1738854865	34.53	33	86.8	55.0	35.4	20.4
SGT230	1824828765	36.24	35	88.2	58.1	38.8	23.5
SGT238	1750563070	34.76	33	86.8	55.0	35.7	21.0
SGT241	1762155688	34.99	33	87.2	55.9	36.4	21.3
SGT274	1822284846	36.18	34	88.0	58.1	38.8	23.4

Sample	Total_Cov_bases	Mean_Cov	Median_Cov	%_bases_>15	%_bases_>30	%_bases_>40	%_bases_>50
SGT038	3808950667	75.63	68	95.6	85.7	76.2	66.1
SGT077	3260149358	64.74	58	94.4	81.1	69.3	57.8
SGT161	3304555971	65.62	59	94.5	81.4	70.1	58.9
SGT187	3555029282	70.59	64	95.2	84.2	73.8	63.2
SGT230	3768806588	74.84	67	95.5	85.6	76.1	66.1
SGT238	3592296890	71.33	64	95.2	84.0	73.8	63.2
SGT241	3616180144	71.81	65	95.3	84.5	74.4	64.0
SGT274	3769591968	74.85	68	95.4	85.5	76.1	66.1