We have several candidate profiles of mutations because it is clear the kind of mutation we are searching but sometimes we do not have a specific clues.
How many variants do you detect for each scenario?
Variants with MAF (Minimum Allelic Frequency) < 0.001 for European American population in ESP 6500
Variants with MAF (Minimum Allelic Frequency) < 0.001 for African American population in ESP 6500
Variants with the two preview MAFs at the same time
B. Progressive selection
Can you apply filters to search “Cardiomyopathy” phenotype in dominant heritage(mother is affected)? (You can see a solution at the end, it could be more than one)
Download these final results in a csv file.
Solutions
A. Individual filters
Candidate variants: 944
Candidate variants: 10925
Candidate variants: 1675
Candidate variants: 18
Candidate variants: 1
14 MNVs
Candidate variants in European American population: 21399
Candidate variants in African American population: 21433
Candidate variants in the two MAFs: 21207
B. Progressive selection
MAF ALL phase 1 < 0.1, MAF ALL phase3 < 0.1, Phylop > 0.5, PhastCons >0.5, GENE: VCL