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bierapp_exercises [2016/09/28 07:43]
fgarcia
bierapp_exercises [2017/05/24 11:26] (current)
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 +====== Prioritization of variants and genes: BiERapp ======
  
 +
 +These exercises show how to analyze exome data for different families or groups. \\
 +**Goal** is to detect associated mutations to Mendelian disease.\\
 +**Input** data is a set of VCF files. **Output** analysis will be a selection of candidate variants.\\
 +\\
 +We are working from [[http://courses.babelomics.org/bierapp/|BiERapp]]. Two steps:
 +  - Uploading VCF files in [[http://courses.babelomics.org/bierapp/|BiERapp]] and automatically these files will be indexed and annotated.
 +  - Now you  can use different filtering options to refine your variant selection strategy.  
 +
 +\\
 +
 +
 +===== Exercises=====
 +Let's go to [[http://courses.babelomics.org/bierapp/|BiERapp]]!\\
 +We have uploaded several VCF files for you. Now these files are indexed and annotated. So it is prepared to work. \\
 +You can check this data with user: **gda**  password: **gda**
 +
 +
 +   * [[bierapp_ex1|Exercise 1]]
 +   * [[bierapp_ex2|Exercise 2]]
 +   * [[bierapp_ex3|Exercise 3]]
 +   * [[bierapp_ex4|Exercise 4]]
 +   * [[bierapp_ex5|Exercise 5]]
 +   * [[bierapp_ex6|Exercise 6]]
 +   * [[bierapp_ex7|Exercise 7]]
 +
 +/*
 +   * [[bierapp_ex8|Exercise 8]]
 +   * [[bierapp_ex9|Exercise 9]]
 +   * [[bierapp_ex10|Exercise 10]]
 +*/