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bierapp_exercises [2016/09/28 07:43] fgarcia |
bierapp_exercises [2017/05/24 11:26] (current) |
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+ | ====== Prioritization of variants and genes: BiERapp ====== | ||
+ | |||
+ | These exercises show how to analyze exome data for different families or groups. \\ | ||
+ | **Goal** is to detect associated mutations to Mendelian disease.\\ | ||
+ | **Input** data is a set of VCF files. **Output** analysis will be a selection of candidate variants.\\ | ||
+ | \\ | ||
+ | We are working from [[http://courses.babelomics.org/bierapp/|BiERapp]]. Two steps: | ||
+ | - Uploading VCF files in [[http://courses.babelomics.org/bierapp/|BiERapp]] and automatically these files will be indexed and annotated. | ||
+ | - Now you can use different filtering options to refine your variant selection strategy. | ||
+ | |||
+ | \\ | ||
+ | |||
+ | |||
+ | ===== Exercises===== | ||
+ | Let's go to [[http://courses.babelomics.org/bierapp/|BiERapp]]!\\ | ||
+ | We have uploaded several VCF files for you. Now these files are indexed and annotated. So it is prepared to work. \\ | ||
+ | You can check this data with user: **gda** password: **gda** | ||
+ | |||
+ | |||
+ | * [[bierapp_ex1|Exercise 1]] | ||
+ | * [[bierapp_ex2|Exercise 2]] | ||
+ | * [[bierapp_ex3|Exercise 3]] | ||
+ | * [[bierapp_ex4|Exercise 4]] | ||
+ | * [[bierapp_ex5|Exercise 5]] | ||
+ | * [[bierapp_ex6|Exercise 6]] | ||
+ | * [[bierapp_ex7|Exercise 7]] | ||
+ | |||
+ | /* | ||
+ | * [[bierapp_ex8|Exercise 8]] | ||
+ | * [[bierapp_ex9|Exercise 9]] | ||
+ | * [[bierapp_ex10|Exercise 10]] | ||
+ | */ |