#Example1: solid.fastq
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#1. Open FastQC program:
fastqc &

#2. Trim your sample based on its quality with a minimum quality threshold of 20:
fastq_quality_trimmer -t 20 -i solid.fastq -o solid_t20.fastq

#3. Trim the sample based on its quality with a minimum quality threshold of 28:
fastq_quality_trimmer -t 28 -i solid.fastq -o solid_t28.fastq

#4.Trim the sample based on its quality with a minimum quality threshold of 28, removing the reads with a length lower than 47:
fastq_quality_trimmer -t 28 -l 47 -i solid.fastq -o solid_t28l47.fastq

#5. Remove the reads with less than a 90% with quality above 20:
fastq_quality_filter -q 20 -p 90 -i solid.fastq -o solid_q20p90.fastq



#Example2: mirna.fastq
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#1. Open FastQC program:
fastqc &

#2. Trim your sample based on its quality with a minimum quality threshold of 20:
fastq_quality_trimmer -t 20 -i mirna.fastq -o mirna_t20.fastq

#3. Trim the sample based on its quality with a minimum quality threshold of 28:
fastq_quality_trimmer -t 28 -i mirna.fastq -o mirna_t28.fastq

#4. Trim the sample based on its quality with a minimum quality threshold of 28, removing the reads with a length lower than 30:
fastq_quality_trimmer -t 28 -l 30 -i mirna.fastq -o   mirna_t28l30.fastq

#5.Trim the sample based on its quality with a minimum quality threshold of 28, removing the reads with a length lower than 35. 
fastq_quality_trimmer -t 28 -l 35 -i mirna.fastq -o mirna_t28l35.fastq