Network Miner Tutorial

You have obtained a ranked list of proteins or genes ordered from some particular experiment (e.g. they are the result of a differential expression analysis, they have an interesting impact on phenotype like cell cycle, etc). From this list of proteins/genes, you want to use protein-protein interaction data to find out their possible role as a protein complex, as a signaling pathway, etc.

Network Miner looks for significant subnetworks of protein-protein interactions within a list of ranked genes/proteins to find out their possible role as a protein complex, as a signaling pathway, etc.