General information about the selected MCN
- result_mcn.sif is a cytoscape compatible format file that contains all protein-protein interactions from the Network Miner-selected MCN.
- result_mcn_interactors.txt is a tabulated file that contains information about topological role of your proteins-genes in the MCN (relative betweenness, connection degree and clustering coefficient parameters) and functional information (GO and Kegg). Exactly the file has 8 columns with:
- input_id, the input id.
- id, the corresponding ensemble id.
- type, refers to the origin of the node. There will be “List” if the protein/gene is in your initial list or “external” if is an external protein/gene used to draw the MCN.
- bet, or relative betweenness is a topological parameter that accounts for the centrality of the node within the MCN.
- clust, or clustering coefficient is a measure of connectivity that evaluates how connected is the node neighborhood.
- conn, or connections degree is the number of connections of a node.
- go, Gene Ontology terms associated to the node.
- kegg, kegg pathway identifiers associated to the node.