GDA 2017

Program / teachers / Contact

Software list

bedtools2 (http://bedtools.readthedocs.io/en/latest/)
bowtie2 (http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)
bwa (http://bio-bwa.sourceforge.net/)
cutadapt (https://pypi.python.org/pypi/cutadapt)
FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/)
GenomeAnalysisTK (https://software.broadinstitute.org/gatk/)
HTSeq-count (https://pypi.python.org/pypi/HTSeq)
IGV (http://software.broadinstitute.org/software/igv/)
picard tools (https://broadinstitute.github.io/picard/)
samtools (http://www.htslib.org/)
tophat-2 (https://ccb.jhu.edu/software/tophat/index.shtml)

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