Presentation
Web usage
Data Management
Data Preprocessing
Expression Data Analysis
Genomic Data Analysis
Functional Profiling Analysis
Human Embryonic Stem Cells Under Hypoxia Conditions
A time course study. 16 Agilent one-color arrays.
Files:
- Sample information: Classification information of each sample (array). In a tab delimited text file.
- Normalized data: using agilent background correction and quantiles between array normalization. Tab delimited text file. (8.000 genes)
The design of the data is as follows:
| filename | samplename | time | oxlevel | replicate | timeindays | class |
|---|---|---|---|---|---|---|
| 12h_21_1_251485017921_1_2.txt | 12h_21_1 | 12h | 21 | 1 | 0.5 | normal |
| 12h_21_2_251485017924_1_1.txt | 12h_21_2 | 12h | 21 | 2 | 0.5 | normal |
| 12h_5_1_251485017921_1_3.txt | 12h_5_1 | 12h | 5 | 1 | 0.5 | hypoxia |
| 12h_5_2_251485017924_1_2.txt | 12h_5_2 | 12h | 5 | 2 | 0.5 | hypoxia |
| 15d_21_1_251485017958_1_3.txt | 15d_21_1 | 15d | 21 | 1 | 15 | normal |
| 15d_21_2_251485017958_1_4.txt | 15d_21_2 | 15d | 21 | 2 | 15 | normal |
| 15d_5_1_251485017923_1_4.txt | 15d_5_1 | 15d | 5 | 1 | 15 | hypoxia |
| 15d_5_2_251485017957_1_3.txt | 15d_5_2 | 15d | 5 | 2 | 15 | hypoxia |
| 24h_21_1_251485017922_1_1.txt | 24h_21_1 | 24h | 21 | 1 | 1 | normal |
| 24h_21_2_251485017924_1_4.txt | 24h_21_2 | 24h | 21 | 2 | 1 | normal |
| 24h_5_1_251485017922_1_2.txt | 24h_5_1 | 24h | 5 | 1 | 1 | hypoxia |
| 24h_5_2_251485017956_1_1.txt | 24h_5_2 | 24h | 5 | 2 | 1 | hypoxia |
| 5d_21_1_251485017922_1_3.txt | 5d_21_1 | 5d | 21 | 1 | 5 | normal |
| 5d_21_2_251485017958_1_2.txt | 5d_21_2 | 5d | 21 | 2 | 5 | normal |
| 5d_5_1_251485017922_1_4.txt | 5d_5_1 | 5d | 5 | 1 | 5 | hypoxia |
| 5d_5_2_251485017956_1_3.txt | 5d_5_2 | 5d | 5 | 2 | 5 | hypoxia |
